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amp-pd-workflows

Pipeline definitions used to construct AMP-PD data products

api-client-java

Provides a command line interface for API queries in Java.

api-client-javascript

A simple web application that demonstrates how javascript can be used to fetch data from the Google Genomics APIs.

api-client-python

Provides a simple genome browser that pulls data from the API in Python.

bigquery-examples

Example BigQuery integrations. Includes both sql and R wrappers.

codelabs

Codelabs demonstrating usage of several tools and systems on genomic data.

continuous-deployment-demo

dataflow-java

Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.

docs

Documentation for all of the googlegenomics repositories.

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

elasticluster

gcp-variant-transforms

GCP Variant Transforms

gcsfuse

getting-started-bigquery

Examples of how to get started with genomics data in BigQuery in many languages.

nextflow

A DSL for data-driven computational pipelines

pipelines-api-examples

Examples for the Google Genomics Pipelines API.

schemas

Work on data models and APIs for Genomic data.

smash

Benchmarking toolkit for variant calling

solutions-google-compute-engine-cluster-for-grid-engine

Grid Engine on Compute Engine provides a shell script to manage a Compute Engine cluster along with instructions on how to install and configure Sun Grid Engine on the Compute Engine cluster

tetralogy-of-fallot

Accompanies the Tetralogy of Fallot Terra Workspace

variant-annotation

Use cloud technology to annotate human sequence variants in parallel.

wdl

Workflow Description Language - Specification and Implementations