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Meghan Ferrall-Fairbanks's Projects

2019-imo-wksp-teamred-crlm icon 2019-imo-wksp-teamred-crlm

Code associated with the modeling exploration of tumor board evolution in metastatic colorectal cancer with liver metastasis by Team Red at the 2019 Moffitt IMO Workshop on Tumor Board Evolutionary on November 3-8, 2019.

a2780-scrnaseq icon a2780-scrnaseq

single-cell RNAseq analysis pipeline for A2780 treatment resistance

bladder-cancer icon bladder-cancer

repository for project exploring evolutionary-based therapies in bladder cancer

cmml-diversity icon cmml-diversity

single-cell RNA sequencing pipeline for analyzing CD34+ cells from patients with CMML

covid-19 icon covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

distances.jl icon distances.jl

A Julia package for evaluating distances (metrics) between vectors.

emsi-2021 icon emsi-2021

repository of lab assignments from EMSI 2021

geckoscreen.jl icon geckoscreen.jl

data analysis pipeline for sequences identified from GeCKO screens

hypoxia-genes icon hypoxia-genes

comparative genomic study of hypoxia genes across a variety of mammalian species

lung-cancer icon lung-cancer

developing adaptive therapy scheduling for lung cancer

ml-cell-migration icon ml-cell-migration

pipeline for an automated machine learning-driven assay for robust and accessible analysis of cell migration

oncodiversity.jl icon oncodiversity.jl

calculating patient diversity from VDJ CDR3 sequences recovered from patient BAM files

scatacseq icon scatacseq

analysis pipelines for single-cell ATATseq data

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