mcolosimo-p4 Goto Github PK

arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

bix

tabix file access with golang using biogo machinery

bridge

SciDB input/output using external storage

cubex

CubeX: Cubic exact solutions for the estimation of pairwise haplotype frequencies

gota

Gota: DataFrames and data wrangling in Go (Golang)

jupyterhub-docker

A configuration for a JupyterHub+DockerSpawner+CASAuthenticator server with Traefik proxy, based on docker-compose

jupyterhub_docker

Easy JupyterHub setup using Docker

ldsc

LD Score Regression (LDSC)

minikeyvalue

A distributed key value store in under 1000 lines. Used in production at comma.ai

nextflow

A DSL for data-driven computational pipelines

okta-oauth2-proxy-example

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

shiro-jwt-showcase

A Showcase project for using Apache Shiro with JWT as Token

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

ukb_rap

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files