mdsmith Goto Github PK
Name: Martin Smith
Type: User
Company: @PacificBiosciences
Location: Menlo Park, CA
Name: Martin Smith
Type: User
Company: @PacificBiosciences
Location: Menlo Park, CA
Just a basic FMA4 test for our (and potentially your) FMA4 compatible systems (eg. Bulldozer, Interlagos...)
A python program to run BSREL on batches of input Nexus files utilizing bpsh and a cluster.
Simulation Study of BSRELvar
Codon Aligner in OpenCL
For testing and quantifying the advantages of a codon aligner in 454 sequences.
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
my very basic dot_files
A PacBio genome browser for command line nerds
Simulation code (in HBL) for FUBAR3D
HyPhy: Hypothesis testing using Phylogenies
HyPhy batch files to iteratively optimize a BSREL model of sequence evolution
Manuscript writing collaboration test
OpenCL accelerated Matrix Multiply Library in C++
A library for fast Matrix Multiplication in Python, with OpenCL acceleration.
using pyOpenCL to accelerate a model of MLE
Multiple multiplication (e.g. exponentiation and maximum likelihood) library accelerated with OpenCL
A batch file for running BSREL, BSREL3 and MG94 quickly, easily, and comparably.
A suite for testing and benchmarking various memory accession techniques in OpenCL
A suite for testing and benchmarking various methods of getting data from host to device. I'm going to go crazy and put reading and writing from device memory in here too. Wow!
OCL implementation of the maximum likelihood calculation.
OpenCL implementation of HYPHY's Maximum Likelihood loops
PacBio data inspection/munging tools (unsupported)
PulseRecognizer minus minus
Misc games and AIs in Python
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Tree tools in Python
Python Class Mappings for XML Schema
Simulations!
A fun shell script for checking whether or not you are in an instance of GNU Screen
Shortens the sequences in a Nexus file.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.