Comments (4)
Hi @Karimi-81 , do you have root privileges on the machine you are using?
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In the meanwhile, I found a similar issue with another project. Could you try a solution described there, i.e. downgrading tbb by running
conda install tbb=2020.2
?
Link to the thread: https://www.biostars.org/p/494922/
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Sorry to interrupt you again. I got another error:
Constructing the graph...
Threads = 16
Vertex length = 25
Hash functions = 5
Filter size = 68719476736
Capacity = 1
Files:
/scratch/karimi81/sibeliaz/genome1.fasta
/Pacbio_data/NCBI_Prep/assembly_new_IDs.fasta
Round 0, 0:68719476736
Pass Filling Filtering
1 188 335
2 130 22
True junctions count = 51616635
False junctions count = 34209474
Hash table size = 85826109
Candidate marks count = 724970458
Reallocating bifurcations time: 31
True marks count: 688877364
Edges construction time: 137
Distinct junctions = 51616635
Loading the graph...
Analyzing the graph...
[..................................................]
Generating the output...
Blocks found: 2148015
Coverage: 0.23
bash: global_alignment: command not found
is this issue related to aligner? should I install or load aligner separately. I used the last version of software in conda.
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Related Issues (20)
- free -w erro
- How would it deal with phased genomes?
- SibeliaZ/spoa/vendor/bioparser/include/bioparser/parser.hpp:124:19: error: 'gzFile_s' was not declared in this scope
- Installation issues HOT 2
- please include ##sequence-region pragmas in blocks_coords output HOT 4
- more detailed description for output HOT 1
- Conda installation doesn't include maf_to_gfa1.py HOT 2
- support gzip'd input fasta HOT 1
- is it suitable for the very big genome? HOT 2
- Apply the tool to virus HOT 4
- Q on coverage, multi-genome alignment, and maf2synteny HOT 4
- (support oneTBB) fatal error: tbb/mutex.h: No such file or directory HOT 3
- Question about block_coords.gff output
- Unexpected output HOT 1
- PackagesNotFoundError: The following packages are not available from current channels: - sibeliaz HOT 4
- sibeliaZ outputs HOT 2
- # running issue
- Getting alignments after running with "-n"
- question about LCB determination
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