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commap

DMS analysis of envelope ligands

coverage

covid_spike_lineage

datasharingpolicy

Adapted from Jeff Leek's guide "How to share data with a statistician"

dms

Infos and scripts for Data Management of Sequencing Data at the IMV

ecbc

Subtype assignment and primer (constant region) trimming for antibody sequences with Error Correcting BarCodes

envseq

Fully automated HIV-1 env plasmid sequencing analysis

germab

Pipeline to analyse germline antibody sequences

hcv_sanger_validation

HCV_Sanger_Validation

minvar

A tool to detect minority variants in HIV-1 and HCV populations

miseq-maintenance-status

Provides an overview over the current maintenance status of an Illumina MiSeq sequencer

miseq-qc

Different tools and scripts to trace quality of Illumina MiSeq runs

nanoporemet

neomerger

ont_amplicon

create consensus sequence from Oxford Nanopore Technologies (ONT) amplicon sequencing

ptmismatch

Examination of Primer-Template Mismatches

runcontrol

sc-ansible

Ansible playbook to configure instance on Science Cloud.

sc-setup

Configuration scripts for ScienceCloud

shiny-server

A collection of Shiny Apps hosted on our shiny server. The apps can be accessed by browser within the UZH network.

smaltalign

Quick iterative alignment of reads against a given reference using smalt.

utility2molis

Shiny app which takes the export of an SARS-CoV-2 E-Gen Cobas Utility run and returns a readable pdf report.

v3seq

V3 loop from sequencing data

variant-calling

computes all variants including indels from Illumina sequences compared to a reference sequence

virmet

Set of tools for viral metagenomics.

virome-protocols

version controlled protocols for virome sequencing