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2015

Public material for CS109

2015lab1

2018-cs109b

Harvard CS109b Public Repository

a-2017

Public Repository for cs109a, 2017 edition

ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

angsd

Program for analysing NGS data.

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

beforephylo

Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction

bio_tools

Useful bioinformatic scripts

cafe

Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

catfasta2phyml

Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

dadi

Automatically exported from code.google.com/p/dadi

dadi_pipeline

A workflow for performing 2D and 3D demographic model testing with the python module dadi.

data-science-ipython-notebooks

Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

datascienceresources

Open Source Data Science Resources.

ehux_hd

evobir

R package: Evolutionary biology in R

evogen_course

Material for Evolutionary Genomics course - data analysis module

free-data-science-books

Free resources for learning data science

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

intro2stats

Introduction to Statistics using Python

iods-final

IDOS Final Assignment

iods-project

template for IODS course projects

jupyter

Jupyter metapackage for installation, docs and chat

logistic-regression-tutorial

Logistic Regression Workshop for CAIS++

machine-learning-for-software-engineers

A complete daily plan for studying to become a machine learning engineer.

mavr

various bioinformatic instruments

melakbet.github.io

mirlo

A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.

modern-pandas

Source code for my collection of articles on using pandas.