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d3flux

D3.js based visualizations of cobrapy metabolic models

dash-cytoscape

Interactive network visualization in Python and Dash, powered by Cytoscape.js

explore_machine_learning

Just a series of notebook to explore machine learning methods with biological sciences examples

gseapy

Gene Set Enrichment Analysis in Python

hmg

Heterogeneous Multiphasic Growth (HMG) based on the Cooper-Helmstetter cell cycle model for the simulation of (K-12 and TOP10) bacterial populations growth in a well-mixed environment

intersectomics

Package to study time series (or other series) multi-omics patterns of expresssion with replicates

interspersed_repeat

Find the interspersed repeats in a DNA sequence that are 9bp or larger

metaxime

Collection of projects for the analysis of metabolic pathways in cellular metabolisms

metaxime-frontend

A javascript frontend to the metaxime project

retropath2

Perform retrosynthesis to calculate possible metabolic routes from a collection of sink files to a target

retrosynthesis

Whole retrosynthesis pipeline using RetroRules, RetroPath2.0 and RP2paths

rnaseqsamplesize

Continue the development and maintenance of the package RnaSeqSampleSize

searchlight2

Automated bulk RNA-seq exploration and visualisation using dynamically generated R-scripts.

sktime

A unified framework for machine learning with time series

smilesdrawer

A small, highly performant JavaScript component for parsing and drawing SMILES strings. Released under the MIT license.

stats_explore

Just personal project to explore different statistical methods

vue_test