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artifactory-test

Simple tests for working with artifacts.openmicroscopy.org.uk

big-image-viewer

Simple JavaFX viewer for large images backed by http://github.com/openmicroscopy/bioformats

bio-formats-bundles

**Experimental** Distribution bundles for bio-formats releases

bio-formats-documentation

Bio-Formats documentation

bio-formats-octave-docker

Bio-Formats Octave container based on openmicroscopy/octave

bioformatmegacapture

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

bioformats-examples

Example code that demonstrates the Bio-Formats API in Java and C++

bioformats2raw

Bio-Formats whole slide imaging to raw format converter

cidre

A general illumination correction method for optical microscopy.

cpp-sandbox

etc

Miscellaneous tools and scripts

fiji

Fiji Is Just ImageJ

file-leak-detector

Java agent that detects file handle leak

imagej

ImageJ2

isyntax2raw-1

iSyntax to raw format converter

jpegxl-sandbox

jxrlib

jzarr

A Java implementation of the API offered by the Python zarr package

libjpeg-turbo

git-svn mirror of libjpeg-turbo

libjpeg-turbo-java

libjpeg-turbo Java build

melissalinkert.github.io

metpy

MetPy is a collection of tools in Python for reading, visualizing and performing calculations with weather data.

misc-plugins

Miscellaneous ImageJ plugins

native-lib-loader

Native library loader for extracting and loading native libraries from Java.

netcdf

Patched version of the netCDF Java library

ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ngff-converter

NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF

ome-codecs

OME image compression (coder-decoder implementations)

ome-common-java

Java library providing common functionality for all OME Java components