Name: Mohammed OE Abdallah
Type: User
Company: University of British Columbia
Bio: Post-Doctoral Fellow, Bioinformatician
Centre for Molecular Medicine and Therapeutics, University of British Columbia
Location: Vancouver, Canada
Mohammed OE Abdallah's Projects
AIONER
Alpaca dataset from Stanford, cleaned and curated
🧑🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
Example R scripts to run burden and association analysis on array CNV data
A list of D3 libraries, plugins and utilities
This repo is for the Linkedin Learning course: Azure Kubernetes Service (AKS): Deploying Microservices
Validated, scalable, community developed variant calling and RNA-seq analysis
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
Bio CorEx
Workshops for learning Bioconductor
Work for Bootstrap edX course
CaPO4Sim, the virtual physiology simulator
High-Performance NoSQL database and RESTful web services to access to most relevant biological data
An R client for CellBase, the OpenCB project
coding exercise using TCGA immune infiltration data
This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher
Data and code behind the articles and graphics at FiveThirtyEight
R's data.table package extends data.frame. More info:
The Leek group guide to data sharing
R notebooks for the code samples of the book "Deep Learning with R"
Recent Papers including Neural Symbolic Reasoning, Logical Reasoning, Visual Reasoning, planning and any other topics connecting deep learning and reasoning
Markdown templates for DO Community Authors
My personal dockerfiles
:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
Compilation of R heatmap functions.