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1000_genomes_examples

Examples using R and 1000 genomes data

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

agentbind

atlantis

Code used for biomarker discovery using party (building conditional random forests)

cadd-scripts

CADD scripts release for offline scoring. For more information about CADD, please visit our website

ccr

Building the constrained coding regions (CCR) model

ccrhtml

A small repo for storing the code for making the files and html for CCRs.

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

clinical-filter

filtering trio-based genetic variants in VCFs for clinical review

clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

clusterburden

Rare variant association test (missense, clustering, autocontrols)

clustering-mixed-data

A repository with various methods for clustering mixed datasets in python

clusterprofshinyora

A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries

clustvis

ClustVis web tool

code-smells-and-feels

Talk on code smells and feels and how to change that via refactoring

conshmm

cs31projects

projects for CS31 Spring 2018 @ UCLA

data

Data and code behind the articles and graphics at FiveThirtyEight

dbnsfp-javasearch

dcell

DCell browser and gene deletion simulator

dge_workshop

dnaplotlib

DNA plotting library for Python

dsbook

Repository for data science book

eccb2018

ECCB 2018 Workshop - Exploring programmatic access to protein sequence, function and structure information

email-blueprints

Email Blueprints is a collection of HTML email templates that can serve as a solid foundation and starting point for the design of emails

ensembltohgnc

This script takes in a tab-separated file containing at least one column of Ensembl IDs and a string indicating the header for this column, and outputs a tab-separated file identical to the input file except that it has an additional column containing mapped HGNC gene symbols for each row.

flat-color-icons

Free Flat Color Icons

gene_lists

List of gene lists for genomic analyses.

gene_sets

Mendelian disorder gene sets for specific traits, created from mining OMIM for phentoype-specific clinical keywords

genetic-evidence-approval