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Matteo Fumagalli's Projects

angsd icon angsd

Non-official repo for ANGSD. For the official website check =>

copenhagen icon copenhagen

Analysis of genotyping and next-generation sequencing data in medical and population genetics

imagene icon imagene

Estimation of population genetic parameters using deep learning

ngsclean-1 icon ngsclean-1

Pipeline for NGS read (filtering, trimming, merging) and SNP (quality, depth, biases, ...) quality control

ngsf icon ngsf

Estimation of per-individual inbreeding coefficients under a probabilistic framework

ngstools icon ngstools

Programs to analyse NGS data for population genetics purposes

physalia-lcwgs icon physalia-lcwgs

Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 19-22 2020

tjarno icon tjarno

Demographic inferences from NGS data

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