mfumagalli Goto Github PK
Name: Matteo Fumagalli
Type: User
Twitter: Matte0Fumagalli
Location: London
Blog: www.evogenomics.ai
Name: Matteo Fumagalli
Type: User
Twitter: Matte0Fumagalli
Location: London
Blog: www.evogenomics.ai
Non-official repo for ANGSD. For the official website check =>
Bayesian methods in ecology and evolution
Scripts used for Fumagalli, Camus, Diekmann et al. 2019 (bioarxiv)
Analysis of genotyping and next-generation sequencing data in medical and population genetics
Tutorial of ngsTools and ANGSD for Copenhagen 2016 course students
Estimation of population genetic parameters using deep learning
Scripts for initial data filtering
Pipeline for NGS read (filtering, trimming, merging) and SNP (quality, depth, biases, ...) quality control
Estimation of per-individual inbreeding coefficients under a probabilistic framework
Population genetics analyses from NGS data
NGS data simulator
Programs to analyse NGS data for population genetics purposes
Utilities to manipulate NGS data files
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 19-22 2020
rtd-tutorial
Demographic inferences from NGS data
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