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mg14's favourite R functions

This repository contains mg14's favourite R functions. It's early days, eventually this shall be transformed into an R package.

###Installation

> library(devtools); install_github("mg14/mg14")

Moritz Gerstung's Projects

cgpvaf icon cgpvaf

Calculates the Variant Allele Fraction of variants in VCF files

coxhd icon coxhd

This repo won't be updated. Please see https://github.com/gerstung-lab/CoxHD for the most recent version

deepsnv icon deepsnv

INACTIVE FORK. Please issue pull requests to gerstung-lab/deepSNV

deepsnv-old icon deepsnv-old

A bioconductor package for subclonal variant calling

desh-data icon desh-data

Sequence lineage information extracted from RKI sequence data repo

dndscv icon dndscv

dN/dS methods to quantify selection in cancer and somatic evolution

evolution icon evolution

Repository containing code used for the analysis described in the Gerstung et al. PCAWG paper

hdp icon hdp

R pkg for Hierarchical Dirichlet Process

knitr icon knitr

A general-purpose tool for dynamic report generation in R

mds-expression icon mds-expression

R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes

mg14 icon mg14

mg14's favourite R functions

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