2019-02-05-wageningen-genomics

astrobiomike

basemap

Jupyter notebook to plot geographical datasets using basemap

bioawk

BWK awk modified for biological data

biodataservices

BioData Services corporate website

boxplotr.shiny

shiny application to generate box plots with R

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

code_py

A collection of well-commented code snippets for data science

denovo2differential

De novo assembly of mRNA-Seq reads + differential expression of these transcripts + annotation of the de novo assembled transcripts

docker-for-teaching

events

Materials and reports related to snakemake-days-fr events

freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

funannotate

A genome annotation pipeline based on funannotate: Snakemake pipeline + Docker image

github_publication_template

A template to generate a GitHub template for a scientific publication. Contains sub-folders for figures, sub-folders for tables, a README file with the figure list, etc.

gviz

Scripts to plot NGS data on genomic coordinates

how-many-reads

Analyses related to RNA-seq experimental design: how many reads per sample, power, etc.

jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

jvarkit

Java utilities for Bioinformatics

learning_docker

Getting started with Docker

me_and_myself

A repository to demonstrate collaboration with one person (yourself)

me_and_myself_and_i

A demo to show how to collaborate with oneself through RStudio, git and GitHub

metabarcoding

Metabarcoding Pipeline

mgalland.github.io

My personal website

microbiotaprocess

mlr3_sandbox

test

mmjulkowska.github.io

roots - forward genetics - big data analysis - r coding

my-first-binder

binder workshop

neurofjacobs

Scripts for projects at Frank Jacobs

nf-gwas-pipeline

A Nextflow Genome-Wide Association Study (GWAS) Pipeline