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advdatasci16

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

bioinformaticsintroduction

bmi704_spring2019

Repo for Harvard Medical School: BMI704, Spring 2019

commondatasets

focus

FOCUS: Fine-mapping Of CaUsal gene Sets

functionalgenomics

hyde

Code for website at:

kallistobustools

kallisto | bustools workflow for pre-processing single-cell RNA-seq data

leafcutter

LeafCutter: Annotation-free quantification of RNA splicing. Yang I Li, David A Knowles, Jonathan K Pritchard.

mgandal.github.io

Build a Jekyll blog in minutes, without touching the command line.

mjgscripts

mr-code

Code for implementing Mendelian randomization investigations

needle

Needle (full name: Needle in a haystack) combines alignment and assembly for comprehensive virome, mycobiome, and eukaryome profiling on the strain level.

neuroexpressoanalysis

Paper at: http://www.eneuro.org/content/4/6/ENEURO.0212-17.2017

omsv

Source code of OMSV

outrigger

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

pacbioeda

Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data

prsice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

psichomics

Interactive R package to quantify, analyse and visualise alternative splicing data

rnaseq_scripts

shared-molecular-neuropathology-across-major-psychiatric-disorders-parallels-polygenic-overlap

suppa

SUPPA: Fast quantification of differential splicing

sync-paperpile-notion

Sync changes in Paperpile to a Notion database.

the-art-of-command-line

Master the command line, in one page

tsc_mia_rnaseq

tw5-auto-publish2gh-pages

Host your tiddlywikis in GitHub pages without any git knowledge or installing any software

vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.