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Comments (3)

dkp avatar dkp commented on June 3, 2024

Follow up: I ran run-01 first and then renamed the func directory, then I ran run2.
I guess this works.

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rcruces avatar rcruces commented on June 3, 2024

Hi, you found a great solution to this. As we also encountered a similar issue we implemented a different solution to process multiple functional acquisitions in the same derivatives output directory. The code is part of the 0.1.3 release, we are currently building the container and the readTheDocs will be updated with this new functionality. The new modality is called -proc_func and it allows to process multiple functional acquisitions (not at the same time) as well al multi echo acquisitions. I'll tell you when the container is ready

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rcruces avatar rcruces commented on June 3, 2024

The following versions including our newest version v0.2.0 can handle this issues, please take a look and try it!

https://github.com/MICA-MNI/micapipe/releases/tag/v0.2.0

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