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anvio

An analysis and visualization platform for 'omics data

c-blosc

A blocking, shuffling and loss-less compression library that can be faster than `memcpy()`.

clixov

cq-notebooks

Notebooks for answering competency questions

ddot

Toolkit for constructing, analyzing, and visualizing data-driven ontologies

ffn

Flood-Filling Networks for instance segmentation in 3d volumes.

fishers_exact_test

Fishers Exact Test for Python (Cython)

hiview

HiView: the universal viewer for hierarchical data

mentorship-survey-workflow

mobmess

ontotype

Constructing and analyzing ontotypes

pickle-blosc

Read and write Pickle files using Blosc compression.

plasx

PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture

platon

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

scikit-learn-fasterrf

A fork of the scikit-learn (https://github.com/scikit-learn/scikit-learn) project. The RandomForestRegressor class has been optimized for faster training.

sourmash

Compute and compare MinHash signatures for DNA data sets.

web

Web content for Meren Lab