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Biclustering about miaviz HOT 4 CLOSED

antagomir avatar antagomir commented on June 1, 2024
Biclustering

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Comments (4)

antagomir avatar antagomir commented on June 1, 2024 1

The example workflow could also contain

  1. How to filter rows and cols with very low correlations
  2. examples on how to visualize some of the most strongly correlated pairs; for checking purposes

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FelixErnst avatar FelixErnst commented on June 1, 2024

This proposal seams to be heavily method driven and therefore should be split between mia and miaViz, if the method makes sense by itself.

To me it seams to be the same case as for #40

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antagomir avatar antagomir commented on June 1, 2024

Support for SE/MAE objects could be provided here for cobiclust package for count assays; and for biclust package for the outputs of getCrossExperimentAssociation i.e. dis/similarity matrices between two distinct assays.

Also possible to start with the examples in OMA, and implement the wrapper later. We can discuss how to prioritize issues.

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antagomir avatar antagomir commented on June 1, 2024

biclustering has relatively little general use; closing this for now.

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