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adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

agfusion

Python package to annotate and visualize gene fusions.

anaquin

Statistical analysis of sequins in C++ and R

awesome-mac

 Now we have become very big, Different from the original idea. Collect premium software in various categories.

baidunetdiskplugin-macos

For macOS.百度网盘 破解SVIP、下载速度限制~

bcbio_validation_workflows

A community menagarie of automated variant validations using bcbio and the Common Workflow Language

blacklist

Application for making ENCODE Blacklists

bs_sim

Bisulfite treatment simulator for a DNA sequence

chrome

VPN Chrome is Google Chromium based browser with built-in VPN capability to let users surf the Internet in a secure and private way.

ctdnasomaticvariantcall.jl

Somatic Variant Call for ctDNA

damage-estimator

eagle

Enhanced Artificial Genome Engine: next generation sequencing reads simulator

facets

Visualizations for machine learning datasets

fgbio

Tools for working with genomic and high throughput sequencing data.

flow

Computational parallel flows on top of GenStage

gem3-mapper

GEM-Mapper v3

gembs

GEMBS is a bioinformatic pipeline designed for hightroughput analysis of DNA methylation from whole genome bisulfites sequencing data (WGBS).

gitflow

Git extensions to provide high-level repository operations for Vincent Driessen's branching model.

google-access-helper

谷歌访问助手破解版

impact-pipeline

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

indelseek

Detect complex indels from next-generation sequencing reads

intervar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

jvarkit

Java utilities for Bioinformatics

labs

Rmd source files for the HarvardX series PH525x

lancet

Microassembly based somatic variant caller for NGS data

metasv

MetaSV: An accurate and integrative structural-variant caller for next generation sequencing

methyliftover

A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.