mikemc Goto Github PK
Name: Michael McLaren
Type: User
Company: @securebio and MIT
Bio: Microbiome analyzer and methods developer
Twitter: mikemc423
Location: United States
Blog: mikemc.cc
Name: Michael McLaren
Type: User
Company: @securebio and MIT
Bio: Microbiome analyzer and methods developer
Twitter: mikemc423
Location: United States
Blog: mikemc.cc
barCoder will generate a list of sequences that can be directly synthesized and inserted into the target genomes via user-specified targeting vectors.
Notes and code for bias-estimation methods
Accurate sample inference from amplicon data with single nucleotide resolution
Code to create 16S taxonomy training files formatted for DADA2
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
Multinomial Logistic-Normal Models (really fast)
:rocket: A sequencing simulator
Stupidly simple Hugo blogging theme
Sweet little Hugo's theme for personal website
R package for simulating microbiome experiments
Datasets for investigating experimental bias in metagenomics measurements
Datasets for investigating experimental bias in metagenomics measurements
Metagenomics calibration R package
Post-process MetaPhlAn2 output in R
Analysis for McLaren, Willis, and Callahan (2019)
R microbiome cookbook
Modernity meets insane extensibility. The future of organizing your life in Neovim.
Module for Neorg inspired by Doom Emacs
Personal open research notebook
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Phyloseq extensions and functions for tidier analysis of microbiome data
A Grammar of Data Manipultation for Phyloseq Objects
Quantitative Microbiome Measurement
Neovim plugin to edit R files
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.