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arabidopsis-conditional-expression

Scripts associated with manuscript "Weaker selection on genes with treatment-specific expression may limit plasticity evolution in Arabidopsis thaliana"

css844-module3-hollender

css844_module2

Extract phenotypes from Syngenta corn pictures

dndscount

Simple counting methods for calculating dN/dS for pairwise codon-based alignment of genes in species pairs

fry-taste-test

Roberts et al 2024 study of which frozen french fry is the best

josephslab.github.io

latex-tutorial

A short tutorial on using LaTeX - a system for typesetting documents

milesroberts-123.github.io

selection-demography-cnn

A workflow to train a convolutional neural network with SLiM outputs

slurm-k-mer-gwas

k-mer-based GWAS on SLURM cluster

snakemake-aks-tutorial

This is a record of my efforts to get snakemake to run on Azure Kubernetes Service. Works as of 2023-01-31

snakemake-tutorial

A brief and simple snakemake tutorial

tajimasdacrossspecies

calculate genetic diversity within multiple species using both k-mer based and snp-based approaches