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MinTu's Projects

3utr- icon 3utr-

Detect alternative 3' UTR in plants using RNA-seq data

bed2gtf icon bed2gtf

Script to convert a BED file into a GTF

biocode icon biocode

Bioinformatics code libraries and scripts

cgat icon cgat

CGAT - Computational Genomics Analysis Tools

chiron icon chiron

Tools and utilities for running Dockerized metagenomics tools in the Cloud

clusterprofiler icon clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

imsa-a icon imsa-a

IMSA+A is an extension of Arron-IMSA program for metagenomic taxonomic classificiation using RNAseq (rRNA depleted) reads.

rna-seq-diff-exprn icon rna-seq-diff-exprn

RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).

tbtools icon tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

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