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ilcnetworks

Gene regulatory networks for intestinal innate lymphoid cells

inferelator_julia

inftrn_lassostars

Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS

interactive_visualization

HAE scripts codebank

maxatac

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

maxatac_data

This repo contains additional resources for the maxATAC Python package.

snakeatac

A snakemake workflow to process ATAC-seq data

snakechip

A snakemake workflow for ChIP-seq data processing

th17_trn_networks

Data and notebooks for "Leveraging ATAC-seq data for transcriptional regulatory inference in Th17 Cells" by Miraldi et al.