mkarikom Goto Github PK

acai

Code for "Understanding and Improving Interpolation in Autoencoders via an Adversarial Regularizer"

additivecellcom.jl

Generalized linear models for cell-cell communication

bdmc

PyTorch implementation of Bidirectional Monte Carlo, Annealed Importance Sampling, and Hamiltonian Monte Carlo

bioinfo_mwes

MWEs for bioinformatics data formats, suitable for creating posts on forums like https://discuss.pytorch.org

bpnet-lite

This repository hosts a minimal version of a Python API for BPNet.

cistopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

crkbd

Corne keyboard, a split keyboard with 3x6 column staggered keys and 3 thumb keys.

cuda_devcon

a cuda-enabled dev container

cuda_devcon2

updated dev container repo supporting python, cuda, and R

ddsm

Dirichlet Diffusion Score Model for Biological Sequence Generation.

distributedstwdlda.jl

distributed, static topic/word LDA

dragonnfruit

A method for analyzing scATAC-seq experiments.

drimpute

Imputing dropout events in single-cell RNA-sequencing data

durian

code for manuscript

durian_paper

Code to reproduce figures in paper

eval_gen

Evaluation code with models for the paper "On the Quantitative Analysis of Decoder-Based Generative Models"

geoparse

Python library to access Gene Expression Omnibus Database (GEO)

immune_emt_survival

juxtacrine_poster

kmk_firmware

Clackety Keyboards Powered by Python

lightning-bolts

Toolbox of models, callbacks, and datasets for AI/ML researchers.

mtscrabble

Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE)

music

Multi-subject Single Cell Deconvolution

mwe-data

data for MWEs, suitable for creating reproducible examples on forums like https://discuss.pytorch.org

pathwaycommons-vos

PathwayCommons v12 on Virtuoso 7

pcquery.jl

pcquery_poster

poster for SocalSysBio

plotneuralnet

Latex code for making neural networks diagrams

podcast_tools

tools to identify and split podcasts for mp3 players

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")