ml4gland Goto Github PK

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ai-atac

Dataset from the AI-TAC convoluional network for predicting mouse immune cell ATAC-seq signal

awesome-dl4g

(Soon to be) community-curated list of software packages and data resources for deep learning for genomics (DL4G)

dealmeida_drosophilas2_umi-starr-seq

UMI-STARR-seq in Drosophila Melongaster, both genome wide and oligo based

deboer_random-promoters_gpra

Quantified activity of millions of random yeast promoters with GPRAs

eugene

Elucidating the Utility of Genomic Elements with Neural Nets

eugene_paper

Code for generating the figures and results presented in the manuscript EUGENe: A Python toolkit for sequence activity prediction and analysis

external

Code snippets and wrappers for use of external tools without forking repos

hepg2_u2af2-eclip

horlacher_hepg2_clip

Predicting protein-RNA interaction via sequence-to-signal learning from CLIP-seq data

k562_atac-seq

ENCODE K562_ATAC-seq dataset

k562_ctcf-chip-seq

k562_starr-seq

motifdata

Motif representation and analysis toolkit in Python

pbmc3k_10x-multiome

rnacompete2013

The 2013-RNAcompete dataset consists of 244 experiments for 207 RBPs using only weakly structured probes

seqdata

Annotated sequence data

seqdatasets

Datasets for benchmarking, testing and developing in EUGENe

seqexplainer

Interpreting sequence-to-function machine learning models

seqpro

Genomic sequence preprocessing toolkit

tutorials

A set of tutorials for how to use all the tools in ML4GLand

ucsd_dl4b

The official GitHub repository of UCSD's DL4B working group

use_cases

Repository documenting applications of the ML4GLand suite on published datasets