Matthew L. Bendall's Projects
My YAML cv.
Make calls to Dfam API
Scripts and reference libraries at Kostas lab.
a collection of scripts and notes related to genomics and bioinformatics
Estimate HERV ages
List of HIV infection RNA-seq datasets
Get HIV references
Hidradenitis Suppurativa mRNA expression profile analysis
Kinetic Data QC and Motif Finding Scripts
Pathoscope: Species identification and strain attribution with unassembled sequencing data
Annotate sequencing reads with barcodes
A swiss-army knife for interrogating PacBio® HDF5 files (cmp.h5, bas.h5)
Cython wrapper for range tree
Quick tips and tutorials
a TCS network beautifier
Identify transposable element loci from repeat annotations.
Package for building TE annotations
Quantification of transposable element expression using RNA-seq