mmathislab Goto Github PK

3d-deeplabcut-cheetah

3D Markerless Body Motion Capture for the Cheetah

acinoset

A repository to reconstruct cheetahs into 3D from videos

awesome-ai-residency

List of AI Residency Programs

awesome-neural-geometry

A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond

buctd

Official Open Source code for "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

carnd-camera-calibration

Images and notebook for camera calibration

cellseg3d

a napari plug-in for direct 3D cell segmentation on cleared tissue -- taking you through training, inference, and review of masks

clearmap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.

coloring-t-sne

Exploration of methods for coloring t-SNE.

commons

DataJoint schemas for neuroscience data

datajoint-python

Relational data pipelines for the science lab

datajoint_demo_deeplabcut

deepgraphpose

DeepGraphPose

deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

deeplabcut-1

A Bonsai interface for real-time markerless pose estimation using DeepLabCut

deeplabcut-cookbook

Scipy Cookbook

deeplabcut-core

Headless DeepLabCut (no GUI support)

deeplabcut-live-gui

GUI to run DeepLabCut on live video feed

deeplabcut-workshop-materials

Workshop material for using DeepLabCut

deeplabcut_madlc_demodata

Example DeepLabCut projects

deepschool.io

Deep Learning tutorials in jupyter notebooks.

dlc2kinematics

a module for kinematic analysis of deeplabcut outputs

dlcutils

Various scripts to support deeplabcut...

docker

Information and scripts to run and develop the Bethge Lab Docker containers

docker4deeplabcut2.0

Docker container for running DeepLabCut2.0 (linux support only)

epfl_tenurepacket_latextemplate

finchscope

Single photon tools for Neuroscience

gspread

Google Spreadsheets Python API

keypoint-moseq