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2020-intro_single_cell_rna_seq

A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.

ancom

R scripts for Analysis of Composition of Microbiomes (ANCOM).

ancombc

Differential abundance (DA) analysis for microbial absolute abundance data

code_club

ctsms

Phoenix CTMS - the ultimative CTMS/PRS/CDMS.

dmrichr

An executable and package for the statistical analysis and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

dreams-built

Business Application that enables timesheet entry and management as well as job scheduling.

gbrsnake

Snakemake pipeline for automating a parellel gbrs workflow on HPC. Includes instructions for building a singularity image from a gbrs docker pull.

gxemm

Linear mixed model to fit polygenic GxE

heatmaply

Interactive Heat Maps for R Using plotly

hospital-management-emr

A complete open source for electronic healthcare record management in Hospitals, Clinics and Pharmacy.

host_gene_microbiome_interactions

Analysis framework for integrating gut microbiome and host gene expression data

imagefeature

Code used with DNN to explore the Image Features in renal histology images

immunesubtypeclassifier

An R package for classification of immune subtypes, in cancer, using gene expression data.

intermediate

small R utility for mediation analysis

make_silva_db

General procedure for making QIIME 2 compatible SILVA reference files

methylation

850k methylation (EPIC) Illumina pipeline

methylation850k

Methylation analysis of Illumina 850K arrays

metscalc

Metabolic Syndrome Severity Calculator

microbiome-metabolome-curated-data

microbiomemarker

R package for microbiome biomarker discovery

mprod_package

Software implementation for tensor-tensor m-product

online_r_learning

Online R learning for applied statistics

openemr

The most popular open source electronic health records and medical practice management solution.

permulite

Decrease run time for permutation analysis by filtering phenotypes at a conservative threshold determined by quantile standard error. Contains methods for self-optimizing runs, self-completing runs, self-generating SLURM batch scripts, QTL results generation and full permutations.

stock_analysis_for_quant

Various Types of Stock Analysis in Excel, Matlab, Power BI, Python, R, and Tableau

text-mining-with-r

Classification of scientific pdf