mobilegenome Goto Github PK

bioscripts

Bioinformatic helper scripts

bismark_add_nn_to_contig

Adding NN to short contigs to make bismark work

demo-tutorial

dima

Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.

dra-docker-training

Material for training docker

dstats

An implementation of the D-statistics test for gene flow signal that works on consensus sequences.

duprates

dvc-test

Testing DVC

ena-upload-cli

ENA upload tool - script your Open Data upload to the European Nucleotide Archive

esat

humanhash-web

A little webserver running on web.py returning a two-word human hash.

lib-common

A repository for common tasks in my daily work.

librarmy

R package of lib-common

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

molgenis-projects

Repository containing settings, configuration files, and public data for different MOLGENIS project servers

msmc2-prepare

Prepare a VCF for MSMC2 by injecting phased genotypes

nextflow

A DSL for data-driven computational pipelines

nf-mapq-stats

Small nextflow pipeline to get MAPQ statistics over genomic windows

panda

Panda is a django implementation for a blogging website.

phylogenomics

Script to perform phylogenomic analyses, e.g. creating genome fragments as basis for gene tree inference etxc.

primerpython

A wrapper for Primer3 to automatically create PCR primers for locus alignments.

pubmed_url

Get PubMed URLs from a list of paper titles (and authors).

r-ecology-lesson

Data Analysis and Visualization in R for Ecologists

scepiage

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-fileinfo

Snakemake workflow to collect file size and MD5 sum for a list of files

snakemake-methylanalysis

Post-mapping analysis of DNA methylation sequencing data

snakemake-snpmasked-refgenome

Snakemake workflow to inject SNPs from a strain into a the mouse refrence genome and create a cellranger index

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

social_distance

Use Google Public popularity data to check if people adhere to social distancing