Error in installing Lomap with networkx 2/fix networkx 2 compatibility

[skfegan]

Error in installing Lomap with networkx 2/fix networkx 2 compatibility

[davidlmobley]

@shuail - are you able to take a look/have you run into this? If not I'll have to dig in.

[shuail]

Yes, I take a look and it seems that the lomap package in conda is out of data. I think all my previous tests and the travis tests are all tested using the source code directly not through the conda package.

[davidlmobley]

Ah, OK. So this means I just need to refresh my memory on how to update the conda version and update that.

In the meantime, @skfegan , you should be able to resolve your issue by installing from source.

[skfegan]

I have installed lomap from source and am still having the same problem. Is there a specific version of NetworkX that I should have (currently version 2.1 is installed)? I am running this on my Ubuntu 16.04 workstation.

[shuail]

@skfegan Yes, I think the current Lomap is compatible with networkx 1.11 but not networkx 2.0 and beyond #30, could you try to downgrade your networkx and see if it works?

[davidlmobley]

@shuail - do you have any thoughts about updating to be networkx 2 compatible?

[shuail]

@davidlmobley here is a note I found https://networkx.github.io/documentation/stable/release/migration_guide_from_1.x_to_2.0.html, will take a deep look this weekend and see if I could find all incompatible pieces.

[skfegan]

Switching to networkx 1.11 works.

[davidlmobley]

@skfegan - thanks. I'll reopen so we remember to investigate networkx 2 compatibility

[shuail]

Create a pull request here #34 to make the code compatible with networkx > 2.0. Sorry that it takes longer than I thought, ends up that I need to manually port the test template pickle file to be read by networkx version 2.0.