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1806

18.06 course at MIT

2017-ucsc-metagenomics

Workshop materials for shotgun metagenomics

2022-cs109b

all-modules-archive

allcools

Toolkit for single-cell DNA methylation analysis.

ancom

R scripts for Analysis of Composition of Microbiomes (ANCOM).

asd-analysis

Analysis for ASD cross-sectional and longitudinal analyses performed by Nancy Moreno Huizar and Myself.

asd_microbiome_aab_qtab

Code accompanying Yap et al. 2021 Autism-gut microbiome connections may reflect autism-related dietary diversity

atac-seq-pipeline

ENCODE ATAC-seq pipeline

autism_precision_medicine

Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.

awesome-becl-resources

Awesome resources for biological engineering students compiled by the MIT Communication Lab

awesome-deep-learning-single-cell-papers

awesome-multi-omics

List of software packages for multi-omics analysis

bhattlab_workflows

Computational workflows for metagenomics tasks, by the Bhatt lab

bioanalyzer

R tools for Agilent electrophoresis data

bioinformatics-workshops

Workshops presented by the Gladstone Bioinformatics Core

book

bp

An R package for analyzing blood pressure data

bulk-rnaseq

Workflow to process bulk RNASeq samples using Salmon and DESeq2

bulk_rnaseq_course_apr22

April - May 2022

camngs

cardio

Pulse oximetry data processing and classification

cheatsheets

RStudio Cheat Sheets

chiapet

Scripts for Analyzing ChIA-PET Data

chm13

The complete sequence of a human genome

class_2022

computationalgenomicsmanual

Robs manual for the computational genomics and bioinformatics class.

core-scripts

One-off scripts for core processing

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

crt_tutorial

Metagenomics tutorial