Monarch Initiative's Projects
Notebooks and analyses for the 2020 NAR submission
Scripts to analyze monarch data sets and scigraph
Annotation Sufficienct Tool
automaxoviewer
A format for language profiles for ontologies
API for linked biological knowledge
Pydantic dataclasses for the Biolink model
Research Prototype for BioWeave Language and Tools
For testing and debugging purposes of boomer
Single source of truth for Monarch Initiative brand assets and resources (e.g. logos
Tooling for merging individual source KGX files in the Monarch ingest pipeline
Add closure expansion fields to kgx files following the Golr pattern
A Cruft cookiecutter for modular Koza ingests
LLM-driven curation assist tool (pre-alpha)
Deprecated, see README
Repository for the coordination of design patterns across ontologies
Data Ingestion Pipeline for Monarch
Prefetch tens of gigs of files & provide more robust update info downstream
mining and merging disease resources
DEMO example knowledge base created using DRAGON-AI