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bigsnpr

R package for the analysis of massive SNP arrays.

bioinfutils

Collection of Python scripts to perform various Bioinformatics tasks.

cosine_distance

countdnabox

Count the occurrence and distance of two DNA sequences in multi-fasta/fastq files

day_1

day_2

day_3

day_4

day_5

django-bootstrap-modal-forms

A Django plugin for creating AJAX driven forms in Bootstrap modal.

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

ensembl-vep

The Variant Effect Predictor predicts the functional effects of genomic variants

fisher_plots_trna_mock

Fisher plots for a comparation of tRNA/MOCK RNA-Seq data

freec

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

getcoverage

github_reviews_dashboard

A CLI dashboard for Github pull requests reviews

illuminahumanmethylationepicv2manifest

insaflu_docs

INSaFLU [https://insaflu.insa.pt] DOCUMENTATION

lvb

High-performance computing in the search for the Tree of Life

lvb-website

LVB website in Django

medaka

Sequence correction provided by ONT Research

minfi

Devel repository for minfi

ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

processcli

Run several commands in parallel, ideal for pair-reads (bioinformatics)

prothint

Protein hint generation pipeline for gene finding in eukaryotic genomes

prsice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

rabbitqc

The new version is available at https://github.com/RabbitBio/RabbitQCPlus

raven

De novo genome assembler for long uncorrected reads

reportype

Flexible bioinformatics tool for targeted loci screening and typing