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atram

Fix finding the assembler module directory

beast2

Bayesian Evolutionary Analysis by Sampling Trees

bioconda-recipes

Conda recipes for the bioconda channel.

biotools

Miscellaneous bioinformatics tools

btsbridge

cn_learn

CN-Learn

contavect

Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data

cpt_gffparser

An extensively featured Python parser for GFF format reading and writing

districtbuilder

DistrictBuilder is web-based, open source software for collaborative redistricting.

galaxy

Data intensive biology for everyone.

gentb-snakemake

From FASTQ file to antibiotic resistance prediction using RandomForest - the GenTB pipeline wrapped in snakemake

git

Git Source Code Mirror - This is a publish-only repository and all pull requests are ignored. Please follow Documentation/SubmittingPatches procedure for any of your improvements.

infrastructure-playbook

Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/

jupyterhub_moss

Jupyterhub MOdular Slurm Spawner

kickstart.nvim

Personal nvim configuration

lmod

Lmod: An Environment Module System based on Lua, Reads TCL Modules, Supports a Software Hierarchy

mediawiki-extensions-auth_remoteuser

Github mirror of MediaWiki extension Auth_remoteuser - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Developer_access for contributing)

mkdocs-include-markdown-plugin

Mkdocs Markdown includer plugin

nipype-pbs-workflows

Port of CTSIT nipype workflow for bedpostx to SLURM

phyluce

software for UCE (and general) phylogenomics

pika

Pure Python RabbitMQ/AMQP 0-9-1 client library

pydna

Collection of python 2.7 Utilities and Wrapper for DNA / NGS data manipulation

q2-scnic

A QIIME2 plugin for running SCNIC

rc_training_conda_envs

rcorrector

Error correction for Illumina RNA-seq reads

regnum-prod

Copy of the phyloregnum repo

sarabande

a python package to measure the 3/4 PCFs of discrete periodic data.

sarek

University of Florida High Performance Computing Implementation of Sarek's Pipeline to detect germline or somatic variants from normal or tumour/normal whole-genome, whole exome, or targeted sequencing

singularity

Singularity: Application containers for Linux

slurm-web

Slurm HPC workload manager web JS dashboard and JSON REST API