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cb-proto

A prototype for a plotly driven client-side, hierarchical scatter plot specialized for investigating biological data.

cluster-db

Single cell clustering database

clusterdb-ingest

Scripts to ingest data into the Stuart lab's cluster database.

django_ninja_factoryboy_pipenv

Boiler plate setup showing off django + django-ninja + factory boy + pipenv setup

h5pandas

pandas like indexing syntax for a pandas dataframe in a .hdf file. It also provides a persistent store for subsets of row or column ids that can be used to index the matrix.

hexamaps

python package for computations needed in Tumor Map visualization pipeline

hexgrid-client

jqtrix

Reference for json parsing in bash with jq.

leesl

Simple implementation of Lee's bivariate spatial association metric.

local-graph-alignment-vis

This is a prototype exploring an interactive viewer for local graph alignment.

mapserver

Serves x-y positions and attributes with groupby operations.

monocle-docker

Environment for executing the monocle trajectory inference algorithm. Contains functions to convert the output to common formats.

neighborcompare

A collection of methods for comparing and visualizing solutions from dimensionality reduction algorithms.

networkx

Official NetworkX source code repository.

portals

Area for shared components and files used by HCA portals and services

python-cli-starter

Boilerplate to make a simple python command line interface.

react-legends

Interactive legends for react

react-milestone-network

A data driven react component for a milestone network.

react-svg-pan-zoom

:eyes: A React component that adds pan and zoom features to SVG

scorect

Automated Cell Type Annotation

streamlit-example

Example Streamlit app that you can fork to test out share.streamlit.io