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anndata

Annotated multivariate observation data

beamer-theme-cmu

A basic Beamer theme for Carnegie Mellon University, inspired by Montpellier

beamer-theme-cwru

A basic Beamer theme for Case Western Reserve University, inspired by Montpellier

biopython

Official git repository for Biopython (converted from CVS)

brca-treatment-response

btrfs-snapshot-boot

initramfs addition for Ubuntu Quantal to make readonly btrfs snapshots on every boot

btrfs-sync-daemon

bwt-sw

BWT-SW - A Practical Local Alignment Tool that Finds All Alignments

cellranger-docker

cellranger-pipeline

chromvar-cwl

CWL workflow for chromVAR

chromvar-docker

Dockerfiles for containerized chromVAR analysis

chromvar-rdata-to-anndata

cistopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

cmappy

Python code

comet

CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer

cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

data-path-utils

Management of scripts that produce/consume data with specific labels

ddrescue

Unofficial GNU ddrescue repository

docker-star

Docker container for the star aligner

dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

episcanpy

Episcanpy: Epigenomics Single Cell Analysis in Python

epub-mobi-convert

Conversion of EPUB ebooks to MOBI format

fourfront

Data portal for submitting and viewing genomic data

fragment-assembly

Bioinformatics Workbench Fragment Assembly

git-maintain

hash-db

Manage a simple database of SHA512 file hashes

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

ims_pipeline

inchlib