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10xreadssimulator

10x Genomics Reads Simulator

anvil

Interact with AnVIL and Leonardo projects

anvil-portal

The front-facing AnVIL user portal

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

canu

A single molecule sequence assembler for genomes large and small

chm13

The complete sequence of a human genome

contrail

Archive of contrail genome assembler

coverage_analysis

dashboard

datasharing

The Leek group guide to data sharing

dazz_db

The Dazzler Data Base

error_correction

flipabit

Thought experiment of what happens when a binary program is randomly edited

galaxy

Data intensive science for everyone.

galaxy-hub

Galaxy Community Hub

genometools

Collection of smaller utilities and helper scripts

igenomics

mobile dna sequencer

jb

Simple Go-style benchmarking for Java. Complete with bees.

learn-wdl

Educational materials for learning WDL

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

moddotplot

ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore to a reference genome with a focus on reads that span structural variations

pacbio_variant_caller

SMRT-SV: Structural variant and indel caller for PacBio reads

pan-sol-data

Genomic data resources from the pan-Solanum genomes project

plotlydev

primer-markdown

Stylesheets for rendering GitHub Flavored Markdown with Primer.

pyencoded-tools

ragoo

Fast Reference-Guided Scaffolding of Genome Assembly Contigs

sapling

SAPLING: Suffix Array Piecewise Linear INdex for Genomics