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Name: CMO Cell-Free DNA (cfDNA) Informatics Team
Type: Organization
Bio: This organization is created to host all the codebase related to cfDNA based assay in CMO at MSKCC
Twitter: MskccCMO
Location: New York, NY
Name: CMO Cell-Free DNA (cfDNA) Informatics Team
Type: Organization
Bio: This organization is created to host all the codebase related to cfDNA based assay in CMO at MSKCC
Twitter: MskccCMO
Location: New York, NY
This repo tracts recurrent artifacts that we observe in MSK-ACCESS data
Scripts for downstream analysis plotting of pipeline output
Generation Quality Controls Files for MSK-ACCESS
Miscelaneous Scripts for MSK-ACCESS workflows
Provides HTML reports with detailed coverage analysis for clinical NGS data.
Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS
Python package to calculate various sample contamination metrics.
Workflow for calling and annotating CHIP variants
Cookiecutter template for a Python package.
Central location for CWL CommandLineTools
Blank CWL for Voyager Operators that don't use cwls.
A list of subworkflows used for MSK-ACCESS data processing.
DeltaMSI: AI-based screening for microsatellite instability in solid tumors
Containers for miscellaneous tools used by ACCESS workflows
Dockerized Trim Galore
Tools for fulcrum bam processing
Project to genotype SNV, INDEL and SV.
Package to merge multiple pair of pair-end fastq data
Microsatellite instability (MSI) detection for cfDNA samples.
Microsatellite instability (MSI) detection for tumor only data.
Documentation for MSK-ACCESS workflows
Misc. tools that may be useful for others at MSK.
Operators for creating input JSON using provided metadata
Aggregate results from bioinformatics analyses across many samples into a single report.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.