Related Issues (20)
- Update vcf2maf to work with later Ensembl vep releases HOT 2
- Release new tag HOT 4
- ensg_to_entrez_id_map_ensembl_feb2014.tsv erroneously assigns Entrez ID
- ERROR: Failed to run the VEP annotator!
- The best solution for one-to-one correspondence between genes and transcripts HOT 3
- VCF2MAF and allele frequency HOT 4
- HGVSc + HGVSp + HGVSp_Short not available after vcf2maf from an annotated VCF from sarek with VEP v108 HOT 3
- Error Argument "" isn't numeric in subtraction HOT 2
- WARNING: Unrecognized effect "sequence_feature". Assigning lowest priority! HOT 1
- Unrecognized biotype/effect HOT 2
- Empty 't_depth' 't_ref_count' 't_alt_count' from VCF with format GT:GL:GOF:GQ:NR:NV HOT 1
- Normalization of vcf file
- vcf2maf generates an empty maf file
- traying to make a maf from an already annotated vcf
- docker clone HOT 1
- error with VEP HOT 1
- maf2maf issue
- Running vcf2maf WARNING: No genotype column for NORMAL in VCF! WARNING: Unrecognized biotype "protein_coding_CDS_not_defined". Assigning lowest priority!
- ERROR: No cache found for homo_sapiens, version 93
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