multiscale-genomics Goto Github PK
Name: Multiscale Genomics
Type: Organization
Bio: Virtual Research Environment- Supporting the 3D/4D genomics community with tools to integrate navigation from sequence to 3D/4D chromatin dynamics data.
Name: Multiscale Genomics
Type: Organization
Bio: Virtual Research Environment- Supporting the 3D/4D genomics community with tools to integrate navigation from sequence to 3D/4D chromatin dynamics data.
Wrapper for BamQC
The DNA Flex Browser lets you navigate through sequence-dependent DNA flexibility data.
A suite of tools to predict DNA flexibility from sequence at different resolutions
Rigid-body protein-DNA sampling
Common functions that are not specific to a given workflow or tool
API for the management of file locations and users within the MuG VRE
Documentation for developers creating tools and pipelines for the MuG VRE
Miscellaneous scripts for mg-process-fastq
Wrappers around mg Tools that have been written in Luigi so that they can be run on alternative cluster technologies to aid in benchmarking the pipelines
Scripts required for the processing of FASTQ files (eg generating adjacency lists for Hi-C data)
Scripts for processing bed, wig and tsv files ready for indexing for the RESTful servers.
Pipeline wrapping the MACS2 tool for the MuG Tool Developers API Workshop
Example pipelines file that is ready to run in the VRE matching the code in the HowTo documentation
RESTful API for TADbit generated 3D coordinates
RESTful API providing adjacency data stored in hdf5 files that have been generated with the scripts in the mg-storage-hdf5 / mg-process-fastq repo
RESTful access to the DMP
Data retrieval of files or sections of files
REST API for gene expression data generated as part of teh MuG project.
RESTful API to an adjacency matrix stored in a MySQL db
Service to monitor REST live services
RESTful API to TAD predictions
Util functions common to all rest services
Repository for code related to the storage of adjacency matrix data in the HDF5 file format
This library outlines the main structures related to the tools section of the VRE.
The MuG Information Network visualises information flow in Multiscale Complex Genomics.
Github.io Jekyll site for the Multiscal Genomics repository
Repository containing pipeline and tools to analyse capture Hi-C data
VRE pyDockDNA tool manager
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.