Shao, Xin's Projects
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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《R语言数据可视化之美》配套代码
CCL-cGPS: a clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
Automated, probabilistic assignment of cell types in scRNA-seq data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
A Windows/macOS GUI based on Clash
Reference-free Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
Automated cell type classification
Single-cell spatial analysis toolbox
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Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
A single-cell spatial-temporal transcriptomic atlas of normal and fibrotic liver regeneration
NicheNet: predict active ligand-target links between interacting cells
Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
Pri-miRNA profiling for single-cell RNA-seq data
Cell-cell communication and lineage inference for scRNA-seq data
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database
Infer and visualize cell-cell communication for single-cell RNA-seq data
A tool for unsupervised projection of single cell RNA-seq data
Deep generative modeling for single-cell omics data