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Musketeer_D's Projects

bismark icon bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

broad-prod-wgs-germline-snps-indels icon broad-prod-wgs-germline-snps-indels

Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline

chm13 icon chm13

The complete sequence of a human genome

cistransregulation icon cistransregulation

Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum

cs-notes icon cs-notes

:books: 技术面试必备基础知识、Leetcode、计算机操作系统、计算机网络、系统设计

deepsignal-plant icon deepsignal-plant

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

deeptools icon deeptools

Tools to process and analyze deep sequencing data.

encode_dna_dynamics icon encode_dna_dynamics

Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"

ensembl-vep icon ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

gatk icon gatk

Official code repository for GATK versions 4 and up

genie3 icon genie3

Machine learning-based approach for the inference of gene regulatory networks from expression data.

ggsci icon ggsci

🦄 Scientific journal and sci-fi themed color palettes for ggplot2

haplotyped-methylome icon haplotyped-methylome

Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation

iterativewgcna icon iterativewgcna

Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.

khmer icon khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

losslessswitcher icon losslessswitcher

Automated Apple Music Lossless Sample Rate Switching for Audio Devices on Macs.

macs icon macs

MACS -- Model-based Analysis of ChIP-Seq

medaka icon medaka

Sequence correction provided by ONT Research

methylpy icon methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

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