mxdeluca Goto Github PK

abodoutlier

Angle-based outlier detection

ascat

ASCAT copy number R package

ascatngs

Somatic copy number analysis using WGS paired end wholegenome sequencing

bioconda-recipes

Conda recipes for the bioconda channel.

cellularity_enigma

Investigating the effects of cellularity on the biological pathways inferered from breast tumours

cellularity_enigma_1

coexpnets

Co-expression network management based on WGCNA + k-means

consensusclusterplus

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ConsensusClusterPlus.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ConsensusClusterPlus.

dmrcate_db

Custom version of DMRcate package

enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

infiniumpurify

R package for DNA methylation analysis

kataegisportal

An R package for detecting and visualizing Kataegis events

pandar

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pandaR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=pandaR.

penncnv

Copy number vaiation detection from SNP arrays

rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

scarhrd

sigprofilermatrixgenerator

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

sigprofilermatrixgeneratorr

R wrapper for utilizing the SigProfilerMatrixGenerator framework