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excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

fasta_utilities

A collection of scripts developed to interact with fasta, fastq and sam/bam files.

fastq-tools

Small utilities for working with fastq sequence files.

filter_contigs

Simple BioPython toy to filter contigs based on size. Used highly-Pythonic "generator" design - ideal for adaptation to stream processing.

from-python-to-numpy

An open-access book on numpy vectorization techniques, Nicolas P. Rougier, 2017

gdc-client

GDC Data Transfer Tool

genefuse

Gene fusion detection and visualization

geneset

genome_coverage_plotter

Simple script to generate whole-genome coverage plots

genomics-research

genomics-workshop

Genomics Workshop Overview

geo

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

gse5859

gse5859subset

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

ipython-notebooks

A collection of IPython notebooks covering various topics.

jcvi_hmp_metagenomic_pipeline

Metagenomic functional annotation pipeline, used within the Human Microbiome Project

jhu_int_prog

Publicly visible materials for intermediate programming

lab_scripts

Consolidated scripts used by the Morin lab

labs

Scripts for HarvardX courses: PH525x

leanpub

This is where our leanpub book will be

learn-advanced-python

Learn advanced python techniques using self contained jupyter notebooks

learn-pandas

Tutorials on how to use pandas effectively to do data analysis

learn-python

learn how to program in python from the very basics like variables, loops and functions to some advanced materials such as functional programming and list comprehension

learndatascience

Open Content for self-directed learning in data science

learning_bam_file

Learning the Sequence Alignment/Map format

lesson_format

Lesson formatter

machine-learning-in-action

⚡️《机器学习实战》代码（基于Python3）