Mathew Rees's Projects
General info, scripts and lectures for the 2019 Physalia course "Big data Biogeography" in Berlin. You can find more information on the webpage for the course: https://idiv-biodiversity.github.io/2019_big_data_biogeography/
Accurate Species Tree EstimatoR series: a family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL)
A simple Hyb_Seq pipeline for conservatively called consensus sequence
BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Scripts for Rees et al. 2023. Testing Whiteโs Floristic Impoverishment Hypothesis in the Forest-Savanna Transition Zones of Africa
Recovering genes from targeted sequence capture data
Rees et a. (in prep.) American Journal of Botany
Plot data analysis for chapter 2
A curated list of R packages used in species distribution modelling
Functional diversity
Scripts and outline of pipeline to generate robust consensus sequence from targeted captured reads