nalcala Goto Github PK
Name: Nicolas Alcala
Type: User
Company: IARC-WHO
Bio: Computational Biologist at the International Agency for Research on Cancer-WHO
Twitter: nl_alcala
Location: Lyon, France
Nicolas Alcala's Projects
cancergenomicscloud_tutorial
Tutorial for the sevenbridges cancer genomics cloud
courses
Slides from lectures and presentations
data_test
Small data files to test IARC nextflow pipelines
deseq2
Differential gene expression analysis based on the negative binomial distribution
facets-nf
Pipeline using facets for fraction and copy number estimate from tumor/normal sequencing
hatchet
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
latex
Repository with latex scripts
midaspom
Bayesian Inference method for patch occupancy data
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
mutect-nf
Mutect pipeline with Nextflow
mutect2_issue
files to reproduce mutect2 issue
ngscheckmate
Nextflow pipeline to detect matched BAMs with NGSCheckMate
popgenbounds
R scripts to explore diversity and differentiation statistics with respects to their mathematical bounds
postalignment-nf
projectleadrship
R scripts to help project leadership
statistics
Repository with scripts for statistical analyses
strelka2-nf
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.