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2brad_denovo

Genome-wide de novo genotyping with 2bRAD

admixturemapping

bio_tools

Useful bioinformatic scripts

bioinformatics

Course materials for Computational Biology and Bioinformatics - BI462

bioinformatics_scripts

A collection of scripts commonly used while running bioinformatics analyses on the Tulane University Cypress HPC

biopyfig

bioinformation python figure

cloveranalysispipeline

cpg

Building a Chinese pan-genome of 486 individuals

fastv

An ultra-fast tool to detect and visualize microbial sequences from sequencing data, and can be used to detect viral infectious diseases, like COVID-19.

galaxy-wrappers

Galaxy tools from South Green

genomeanalysis

Repository for project for Genome Analysis course at UU

gwas_pipelines

Instructions and helpful R code for Running GEMMA and GAPIT

interpretablemlbook

《可解释的机器学习--黑盒模型可解释性理解指南》，该书为《Interpretable Machine Learning》中文版

maker-genome-annotations-tutorial

Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support

metagenomics

metagenomics analysis

mvp

A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

nanshanjin.github.io

ngs_data_processing

Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.

omics_tools

Code writen to be used in RAD-tag population data analysis

popgen

Population genetics analyses

population_genomics_scripts

Scripts of population genomics analysis

populations_genomics

populations_genomics

python

All Algorithms implemented in Python

rad_tools

A collection of usefull tools for RAD or GBS data analysis

real_metagenome_pipeline

rnaseq

script

single-cell-rna-seq

A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.

solarized

precision color scheme for multiple applications (terminal, vim, etc.) with both dark/light modes

vim-colors-solarized

precision colorscheme for the vim text editor