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Name: Natalia Rosa
Type: User
Company: Scuola Normale Superiore
Location: Pisa
Name: Natalia Rosa
Type: User
Company: Scuola Normale Superiore
Location: Pisa
This project focused on the mapping of the host-genetics factors determining COVID-19 severity using Machine learning approaches (supervised, unsupervised Machine learning methods, Pathway signaling processes, and Open Targets web-based Platform). Our study utilized the whole-exome sequencing genome dataset of 2000 European descent patients collected from the GEN-COVID Multicenter Study group (https://clinicaltrials.gov/ct2/show/NCT04549831) coordinated by the University of Siena. The whole-exome genome sequencing dataset contained 1.057M genetic variants of the patients. We used the 2000 patients’ original phenotype information to filter only patients with severity and asymptomatic across all classification criteria (841 patients). We introduced an innovative variant screening strategy that applied K-stratified fold splits of the original dataset to randomly draw a unique 5-fold pool of variants using the patients’ original phenotype information (841 unique patients).
This repository contains all the source code examples and the FAQ for our Android App Development Specialization for Coursera
open-source electronics prototyping platform
A repository for the source code, notebooks, data, files, and other assets used in the data science and machine learning articles on LearnDataSci
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
CAusal Reasoning for Network Identification with integer VALue programming in R
Causal Inference and Discovery in Python by Packt Publishing
chain-event graph for R. This package implements the theory of CEG. Generate and plot CEG objects from manual input or from formatted data.
R and Python scripts for my Summer 2021 undegraduate research project on Chain Event Graphs as part of the URSS scheme
COVID-19 Italia - Monitoraggio situazione
Identifying drug targets by integrating large-scale drug and genetic screens.
This repository contents a script to run e-Driver as well as the necessary files to reproduce the results presented in the paper describing the algorithm.
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Full-Stack Flask and React, published by Packt
Explorer plugin for GraphiQL
HMMER: biological sequence analysis using profile HMMs
Lollipop-style mutation diagrams for annotating genetic variations.
Pipeline to match VIPs with similar non-VIPs and estimate introgression enrichments
The JavaScript Database, for Node.js, nw.js, electron and the browser
Annotates variants in MAF with OncoKB annotation.
:closed_book: Python library and CSS theme to generate PDF reports from HTML/Pug
Web-tool for calculating and visualizing hydrophobic protrusions
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.