nateyjay Goto Github PK
Name: Nate Johnson
Type: User
Company: Center for Genomics and Bioinformatics, Universidad Mayor
Bio: Professor working in computational plant and fungal biology, with a focus on small RNAs.
Location: Santiago, Chile
Nate Johnson's Projects
bam-to-sizes
A simple python script to quantify abundances of aligned reads by size and readgroup.
genesectr
gf-srna-discovery
Clustering and condensing sRNAs to their most expressed variants without use of a genome
gstar_mp
Multi-processor wrapper for the GSTAr sRNA aligner
hmmer-to-table
A simple tool for converting hmmer outputs to a complete table
layermap
A modular heatplot library for R-base graphics
nateyjay.github.io
octoprint
OctoPrint is the snappy web interface for your 3D printer!
seq-pipeline
A toolset for storage-safe RNA-seq analyses
shared-degs
Generating shared DEGs based on a collection of DE-seq analyses
srna-jbrowse
A set of processing scripts for setting up jbrowse with ShortStack sRNA-data
srna-lib-simulator
Generates simulated plant sRNA-seq data based on real input libraries
srna-supfam-cluster
Clusters sRNA sequences by edit distance, nominally into superfamilies
stack-to-base
A tool to search ShortStack sRNA annotations against miRBase
yasma
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