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arboreto

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

arxiv-sanity-preserver

Web interface for browsing, search and filtering recent arxiv submissions

attention-sampling

This Python package enables the training and inference of deep learning models for very large data, such as megapixel images, using attention-sampling

avocado

Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.

awesome-deep-learning-papers

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

basketballcrawler

This is a python module to scrape basketball-reference.com and convert various stats into usable data structures for analysis

caffe

Caffe fork that supports CRF-RNN

caffe-segnet-crf

Merger of SegNet and CRFasRNN caffe branches

ccsig

cellprofiler

An open-source application for biological image analysis

cellprofiler-analyst

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

cheatsheets-ai

Essential Cheat Sheets for deep learning and machine learning researchers

colorgorical

Colorgorical: a tool for creating categorical information visualization color palettes.

decorrelated-adversarial-autoencoder

Tensorflow implementation of Adversarial Autoencoders (with extra option to decorrelate style and classes)

deepdream

desc

Deep Embedding for Single-cell Clustering

enet

ENet: A Deep Neural Network Architecture for Real-Time Semantic Segmentation

frst

Fast Radial Symmetry Transform

gleason-grade-paper

gradient-checkpointing

Make huge neural nets fit in memory

histo-seg

homework

Imitation Learning Homework 1

ihclassify-

iic

Invariant Information Clustering for Unsupervised Image Classification and Segmentation

imageloadgui

keras

Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on TensorFlow or Theano.

magenta

Magenta: Music and Art Generation with Machine Intelligence

micron2

milk

Multiple instance learning